Accepted answer
Twelve months is 52 weeks, so the budget is set by lot turnover, not by the price of an HPLC purity test. Take one lot a quarter as the low case: 4 lots a year, so a test-every-lot policy is 4 assays and a test-every-third-lot policy is 2 once you round up. Take one lot a month as the high case: 12 lots, and the same two policies are 12 assays and 4. The spread between the cheapest and the dearest defensible policy is therefore about a factor of six across the same 52 weeks. Choose the policy before the first result. One chosen after a disappointing figure is a reaction to that figure, and it will not survive the second one. Then spend it where it changes a decision: over a year, one content assay on each new lot tells you more than four purity figures on the same lot, because purity and content are independent and only one of them changes your arithmetic.
Concretely, batch testing establishes what can be claimed about the lot as a whole, and the sample size determines how much you can actually claim.
A statement that "lot 20260412 complies with specifications" is meaningless without stating which vials from the lot were tested and how many there were.
To be exact about it, published segregation failures show that even modern automated processes sometimes produce lots with measurable vial-to-vial variation.
Lyophilised peptide homogeneity studies show that vial-to-vial variation is usually small but occasionally large, depending on the distribution in the freeze-dryer.
The practical summary: a lot number without a sampling statement is a lot number without meaning.
edited 23 Nov 2024 by kwn_analytical — removed a claim I could not source