Answering this needs the purification method, since a trifluoroacetic acid mobile phase leaves trifluoroacetate unless a deliberate exchange was performed.
Acetate salts are produced by a deliberate ion exchange after purification. The exchange costs a processing step and is the reason acetate-form material is more expensive.
Put another way, peptides purified by reverse-phase chromatography with a trifluoroacetic acid mobile phase are isolated as trifluoroacetate salts. The trifluoroacetate content depends on the number of basic residues and can run from a few per cent to well over ten by mass on a heavily basic sequence.
The caveat is that a purity figure is completely blind to counter-ion content, and the two are routinely conflated.
Trifluoroacetate unless a deliberate exchange was done. Ask which.
edited 6 Jul 2026 by s_bhattacharya — added the method parameters